Last updated: 2020-10-23
Checks: 2 0
Knit directory: Viso-NODDI-in-CUD/
This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version 0da468d. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish
or wflow_git_commit
). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files:
Ignored: .Rhistory
Ignored: .Rproj.user/
Untracked files:
Untracked: code/86_labels.txt
Untracked: code/DWI_Preprocess.sh
Untracked: code/Freesurfer_openneuro.sh
Untracked: code/OpenNeuro_FWE_DTI.sh
Untracked: code/OpenNeuro_noddi.m
Untracked: data/Conn_database_clinicals_fwi.csv
Untracked: data/OpenN_FW_noddi_analysis_3.csv
Untracked: data/OpenN_FW_noddi_analysis_results_3.csv
Untracked: data/dataclin8_final.csv
Untracked: test-spatial.R
Unstaged changes:
Deleted: analysis/DTI-FWE.Rmd
Deleted: analysis/DTI-preprocessing.Rmd
Deleted: analysis/T1w-preprocessing.Rmd
Modified: analysis/_site.yml
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd
) and HTML (docs/index.html
) files. If you’ve configured a remote Git repository (see ?wflow_git_remote
), click on the hyperlinks in the table below to view the files as they were in that past version.
File | Version | Author | Date | Message |
---|---|---|---|---|
Rmd | 0da468d | JalilRT | 2020-10-23 | Publish the initial files for Viso-NODDI-in-CUD |
html | 61bf4d2 | JalilRT | 2020-10-22 | Build site. |
Rmd | e4fd5b0 | JalilRT | 2020-10-22 | Publish the initial files for Viso-NODDI-in-CUD |
html | 1d8343e | JalilRT | 2020-10-22 | Build site. |
Rmd | 57d8f6b | JalilRT | 2020-10-22 | Publish the initial files for Viso-NODDI-in-CUD |
html | 12a117e | JalilRT | 2020-10-22 | Build site. |
Rmd | 372d376 | JalilRT | 2020-10-22 | Publish the initial files for Viso-NODDI-in-CUD |
html | f7ee919 | JalilRT | 2020-10-22 | Build site. |
Rmd | ba287d0 | JalilRT | 2020-10-22 | Publish the initial files for Viso-NODDI-in-CUD |
html | fd17534 | JalilRT | 2020-10-22 | Build site. |
Rmd | 0f4f753 | JalilRT | 2020-10-22 | Start workflowr project. |
Datasets and code for the “Neurite orientation dispersion and density imaging in cocaine use disorder” analysis.
Please let us know if something in the code is incomplete or files are missing or you have any problems by here or in:
jalil.rasgadoto@gmail.com and/or apurva.shah@scmia.edu.in
The present study is the result of the exploration analysis of a subjects sample from The Mexican dataset of substance use disorder patients obtained from the National Institute of Psychiatry in Mexico City. In here, we explored the Neurite orientation dispersion and density imaging, specifically in Viso-values. Perfomed by Eduardo A. Garza-Villarreal and Madhura Ingalhalikar.
BIDS compliant raw MRI data are available at OpenNeuro: https://openneuro.org/datasets/ds003037/versions/1.0.0
Clinical and Viso-NODDI data are in folder: data/
For check the workflow go to above tab. Csv files and supplementaries are available in source github of this page: data/